![]() |
Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
|
Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aqcoe2G399200.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 378aa MW: 42323.7 Da PI: 5.0691 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.2 | 2.5e-12 | 168 | 219 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P + + ++ + a+i A+e++++L+ Aqcoe2G399200.2.p 168 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 219 79****************************...9*****************9995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.33E-13 | 166 | 223 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.3E-13 | 166 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.428 | 167 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.2E-17 | 167 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-9 | 168 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.4E-9 | 173 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00361 | 303 | 367 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010377 | Biological Process | guard cell fate commitment | ||||
GO:0045597 | Biological Process | positive regulation of cell differentiation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051782 | Biological Process | negative regulation of cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 378 aa Download sequence Send to blast |
MNKPRIGDIS GENNNIAMVD YMFNNPPQQQ LSSSFGTSTS LDKLNFADVM QFADFGPKLA 60 LNQTKTTEEE NGIDPVYFLK FPVLNDRSQD QNLINAPLTG YNGNEFDEVS VGRNVTSLVE 120 EEEPHVSENN SMQLGFLGGT SLQKNPGSEV KKRKRPRSVK TTEEVESQRM THIAVERNRR 180 KQMNEHLRVL RSLMPGSYVQ RGDQASIIGG AIEFVRELEQ LLQCLESQKR RRLYGNGEAP 240 RPMGDPNSLP IQQPQPPLFP PMPSPTDQIK FGEYDDTGLL EETAENKSFL ADVEVKVLGF 300 DALIKILSRR RPGQLIKTIA ALEDLQFNIL HTNITTIEQT VLYSFNVKVA SESRFTAEDI 360 ASSVQQIFTF IHASSTL* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 168 | 179 | RMTHIAVERNRR |
2 | 228 | 232 | KRRRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012071156.1 | 0.0 | PREDICTED: transcription factor FAMA | ||||
Swissprot | Q56YJ8 | 1e-142 | FAMA_ARATH; Transcription factor FAMA | ||||
TrEMBL | A0A067KT33 | 0.0 | A0A067KT33_JATCU; Uncharacterized protein | ||||
STRING | POPTR_0001s32160.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G24140.1 | 1e-129 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Aqcoe2G399200.2.p |