PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G399200.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 378aa    MW: 42323.7 Da    PI: 5.0691
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G399200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.5e-12168219155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r++h ++Er+RR+++N+ +  Lr+l+P +   + ++ + a+i   A+e++++L+
  Aqcoe2G399200.2.p 168 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 219
                        79****************************...9*****************9995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.33E-13166223No hitNo description
Gene3DG3DSA:4.10.280.101.3E-13166222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.428167218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-17167239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9168219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-9173224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00361303367No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010377Biological Processguard cell fate commitment
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MNKPRIGDIS GENNNIAMVD YMFNNPPQQQ LSSSFGTSTS LDKLNFADVM QFADFGPKLA  60
LNQTKTTEEE NGIDPVYFLK FPVLNDRSQD QNLINAPLTG YNGNEFDEVS VGRNVTSLVE  120
EEEPHVSENN SMQLGFLGGT SLQKNPGSEV KKRKRPRSVK TTEEVESQRM THIAVERNRR  180
KQMNEHLRVL RSLMPGSYVQ RGDQASIIGG AIEFVRELEQ LLQCLESQKR RRLYGNGEAP  240
RPMGDPNSLP IQQPQPPLFP PMPSPTDQIK FGEYDDTGLL EETAENKSFL ADVEVKVLGF  300
DALIKILSRR RPGQLIKTIA ALEDLQFNIL HTNITTIEQT VLYSFNVKVA SESRFTAEDI  360
ASSVQQIFTF IHASSTL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168179RMTHIAVERNRR
2228232KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012071156.10.0PREDICTED: transcription factor FAMA
SwissprotQ56YJ81e-142FAMA_ARATH; Transcription factor FAMA
TrEMBLA0A067KT330.0A0A067KT33_JATCU; Uncharacterized protein
STRINGPOPTR_0001s32160.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.11e-129bHLH family protein